ImmPort's MHC Sequence Feature Structure Viewer highlights the locations of sequence features on crystal structures of classical class I and class II MHC molecules. Features of the ImmPort MHC Sequence Feature Structure Viewer include:

  • Selection/highlighting of any defined sequence feature on a reference structure for each locus
  • Selection/highlighting of other residues of interest on the MHC molecule, peptide or associated receptor
  • Various display modes, including ball and stick, space fill and ribbons
  • Coloring by charge, residue, structure type, temperature factor or composition
  • Zoom and spin
  • Jmol command line for use of advanced Jmol features
  • Image saving (.jpeg)
  • Save/Restore of the image viewer (zoom, highlighting, orientation, etc)

To run the Jmol viewer, you must first select a Locus and then a PDB ID for that locus

Fields marked with an asterisk * are required.

Jmol Selection Criteria:
Species
Locus *
PDB ID *
 

Jmol is an open-source Java viewer for chemical structures in 3D


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