The following tables provide the source, subject, date obtained from source, and date made available in ImmPort for the reference data.

GBrowse

Data Source Data Subject Source Date Date Loaded
human hg17 Gene Track 1 - UCSC Known Genes 2013-05-05 2013-05-09
human hg17 Gene Track 2 - UCSC Ref Genes 2013-05-05 2013-05-09
human hg17 Feature on Gene Tracks - ImmPort Genes (displayed as Note attribute feature) 2013-05-05 2013-05-09
human hg17 Feature on Gene Tracks - Entrez Gene Symbols (displayed as Named feature) 2009-03-06 2009-03-16
human hg17 LD Select tagSNP Track 1 - HapMap Population CEU SNPs 2007-11-14 2008-05-20
human hg17 LD Select tagSNP Track 2 - HapMap Population CHB SNPs 2007-11-14 2008-05-20
human hg17 LD Select tagSNP Track 3 - HapMap Population JPT SNPs 2007-11-14 2008-05-20
human hg17 LD Select tagSNP Track 4 - HapMap Population JPT+CHB SNPs 2007-11-14 2008-05-20
human hg17 LD Select tagSNP Track 5 - HapMap Population YRI SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 1 - Affymetrix 100K SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 2 - Affymetrix 500K SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 3 - dbSNP v125 SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 4 - Illumina MHC Mapping Panel SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 5 - Illumina MHC Exon Centric Panel SNPs 2007-11-14 2008-05-20
human hg17 SNP Track 6 - Illumina Human Genome (Infinium) Panel SNPs 2013-05-05 2013-05-09
human hg18 Gene Track 1 - UCSC Known Genes 2013-05-05 2013-05-09
human hg18 Gene Track 2 - UCSC Ref Genes 2009-03-06 2013-05-09
human hg18 SNP Track 1 - dbSNP v126 SNPs 2008-05-06 2013-05-09
human hg18 Feature on Gene Tracks - Entrez Gene Symbols (displayed as Named feature) 2013-05-05 2013-05-09
human hg18 Feature on Gene Tracks - ImmPort Genes (displayed as Note attribute feature) 2009-03-06 2009-03-16
human hg18 LD Select tagSNP Track 1 - HapMap Population CEU SNPs 2007-11-14 2008-05-20
human hg18 LD Select tagSNP Track 2 - HapMap Population CHB SNPs 2007-11-14 2008-05-20
human hg18 LD Select tagSNP Track 3 - HapMap Population JPT SNPs 2007-11-14 2008-05-20
human hg18 LD Select tagSNP Track 4 - HapMap Population JPT+CHB SNPs 2007-11-14 2008-05-20
human hg18 LD Select tagSNP Track 5 - HapMap Population YRI SNPs 2007-11-14 2008-05-20


Reference

Data Source Data Subject Source Date Date Loaded
NCBI Entrez Gene 2013-05-05 2013-05-09
NCBI Taxonomy 2013-05-05 2013-05-09
NCBI dbSNP Build 125 - SNP Flat, NCBI Genome Build 35 - Hg17 2005-11-01 2006-05-05
NCBI dbSNP Build 126 - SNP Flat, NCBI Genome Build 36.1 - Hg18 2006-05-22 2007-11-14
NCBI dbSNP Build 125 - SNP Sequence, NCBI Genome Build 35 - Hg17 2005-11-01 2006-05-05
NCBI dbSNP Build 126 - SNP Sequence, NCBI Genome Build 36.1 - Hg18 2006-05-22 2007-11-14
NCBI Hapmap Project SNP data (Phase I+II) - dbSNP v125, NCBI Build 35 - Hg17 2006-01-20 2006-04-24
NCBI Hapmap Project SNP data (Phase I+II) Release 22 - dbSNP v126, NCBI Build 36 - Hg18 2007-03-01 2007-11-14
NCBI Hapmap Project Genotype data (Phase I+II) - dbSNP v125, NCBI Build 35 - Hg17 2006-01-20 2006-04-24
NCBI Hapmap Project Genotype data (Phase I+II) Release 22 - dbSNP v126, NCBI Build 36 - Hg18 2007-03-01 2007-11-14
NCBI mRNA Sequence 2013-05-05 2013-05-09
NCBI Homologene (Build 67) 2012-12-14 2013-05-09
NCBI OMIM 2013-05-05 2013-05-09
NCBI PubMed ID and Title Information 2013-05-05 2013-05-09
EBI IMGT HLA data (from Anthony Nolan) Release 3.10.0 2012-10-17 2013-05-09
GO Database GO IDs, GO Terms, Synonyms, Probe->Gene_ID, Graph_Path (latest-full) 2013-05-09 2013-05-09
BIND BIND Interactions - Complex2subunits - Labels - Refs 2007-12-11 2008-05-20
REACTOME Reactome Human Protein Interactions (Version 44) 2013-03-14 2013-05-09
MIPS MIPS Protein-Protein Interaction Database data 2008-05-12 2008-05-20
KEGG Pathway Information 2011-05-11 2013-05-09
PIR UniProt -to- Entrez_Gene (Release 4.15) 2013-05-01 2013-05-09
UCSC Known Gene (Hg15-Hg18, mm3-mm8, rn2-rn4, galGal2-galGal3, dm1-dm2) 2013-05-05 2013-05-09
UCSC Ref Gene (Hg15-Hg18, mm3-mm8, rn2-rn4, galGal2-galGal3, dm1-dm2) 2013-05-05 2013-05-09
UniProt UniProtKB/Swiss-Prot (Release 2012_11 of 28-Nov-2012) 2012-11-28 2013-05-09
UTSWMC LD Select Tag SNPs 2006-02-09 2006-02-09
ImmPort Comprehensive List of Immune-Related Genes (keyword search algorithm by UTSWMC) 2013-05-08 2013-05-08
InnateDB InnateDB Data - Curated InnateDB data, plus BIND, DIP, INTACT, MINT data in InnateDB (2009-03-04) 2013-05-05 2013-05-09


Ontology

Data Source Data Subject Source Date Date Loaded
GO Database Gene Ontology (GO IDs and GO Terms - latest GO monthly full, with gene ontology obo dated 5/11/2013) 2013-05-11 2013-05-12
NCBO BioPortal/UTSWMC Cell Type Ontology (structured controlled vocabulary for cell types), Version 1.55, with additional annotation provided by UT Southwestern 2011-12-12 2013-05-12
NCBI Taxonomy Ontology (Cellular Organism - Metazoa only) 2006-01-31 2006-02-09
NCI Thesaurus, MeSH, ICD-9, and ICD-10 Disease Ontology (Immune Disorder, Population, and Personal Attribute) 2005-10-26 2013-05-09



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